Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4227

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12594 and 12595 are separated by 207 nucleotides12595 and 12596 are separated by 54 nucleotides mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1,655,813 to 1,659,134 12594 mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1,659,342 to 1,664,294 12595 mRNA_4228: 12596 - K00995 pgsA, PGS1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,664,349 to 1,666,570 12596

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,658,412 + 12594 mRNA_4226 0.78 +0.1
1,658,482 + 12594 mRNA_4226 0.80 -0.2
1,658,507 - 12594 mRNA_4226 0.81 -0.2
1,658,511 + 12594 mRNA_4226 0.81 -0.2
1,658,523 + 12594 mRNA_4226 0.82 +0.1
1,658,574 + 12594 mRNA_4226 0.83 +1.8
1,658,661 - 12594 mRNA_4226 0.86 +0.0
1,658,668 + 12594 mRNA_4226 0.86 -0.5
1,658,835 - -0.1
1,658,843 - +0.3
1,658,856 - -0.8
1,658,959 - -1.3
1,658,979 - -0.4
1,658,982 + -0.4
1,659,044 + -0.0
1,659,118 + +0.5
1,659,158 + -0.8
1,659,158 + +0.4
1,659,275 + -0.4
1,659,478 + +2.5
1,659,901 + 12595 mRNA_4227 0.11 +1.0
1,660,271 + 12595 mRNA_4227 0.19 -0.9
1,660,294 - 12595 mRNA_4227 0.19 -0.7
1,660,650 + 12595 mRNA_4227 0.26 +0.3
1,660,764 - 12595 mRNA_4227 0.29 +0.6
1,660,939 - 12595 mRNA_4227 0.32 +0.2
1,660,942 + 12595 mRNA_4227 0.32 +0.1
1,661,345 - 12595 mRNA_4227 0.40 +0.3
1,661,516 + 12595 mRNA_4227 0.44 +0.2
1,661,519 - 12595 mRNA_4227 0.44 -0.2
1,661,626 + 12595 mRNA_4227 0.46 -0.1
1,661,762 - 12595 mRNA_4227 0.49 -0.0
1,661,768 - 12595 mRNA_4227 0.49 -0.1
1,661,946 + 12595 mRNA_4227 0.53 +1.4
1,661,982 + 12595 mRNA_4227 0.53 +0.8
1,662,053 + 12595 mRNA_4227 0.55 +0.6
1,662,066 - 12595 mRNA_4227 0.55 +0.8
1,662,088 - 12595 mRNA_4227 0.55 +0.3
1,662,090 + 12595 mRNA_4227 0.55 +0.2
1,662,103 + 12595 mRNA_4227 0.56 +0.0
1,662,170 - 12595 mRNA_4227 0.57 +0.5
1,662,177 - 12595 mRNA_4227 0.57 -0.2
1,662,183 + 12595 mRNA_4227 0.57 -1.5
1,662,186 - 12595 mRNA_4227 0.57 +0.5
1,662,366 - 12595 mRNA_4227 0.61 +0.3
1,662,379 + 12595 mRNA_4227 0.61 -0.1
1,662,388 + 12595 mRNA_4227 0.61 -0.0
1,662,526 + 12595 mRNA_4227 0.64 -0.5
1,662,527 - 12595 mRNA_4227 0.64 -0.1
1,662,531 + 12595 mRNA_4227 0.64 -1.9
1,662,532 - 12595 mRNA_4227 0.64 +0.2
1,662,534 + 12595 mRNA_4227 0.64 +0.5
1,662,537 + 12595 mRNA_4227 0.65 -0.4
1,662,688 + 12595 mRNA_4227 0.68 +0.1
1,662,837 + 12595 mRNA_4227 0.71 -1.3
1,662,841 - 12595 mRNA_4227 0.71 -0.4
1,662,845 + 12595 mRNA_4227 0.71 +0.3
1,662,846 - 12595 mRNA_4227 0.71 -0.4
1,663,272 + 12595 mRNA_4227 0.79 -1.4
1,663,540 - 12595 mRNA_4227 0.85 +2.2
1,663,607 - 12595 mRNA_4227 0.86 -0.3
1,663,698 + 12595 mRNA_4227 0.88 -0.0
1,663,988 - +0.1
1,664,095 - -1.1
1,664,115 - -0.3
1,664,159 + -0.8
1,664,201 - +0.2
1,664,275 - -0.1
1,664,297 + -0.2
1,664,380 + -0.5
1,664,397 - -0.0
1,664,439 + -0.4

Or see this region's nucleotide sequence