Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4284

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12651 and 12652 are separated by 314 nucleotides12652 and 12653 are separated by 63 nucleotides mRNA_4283: 12651 - KOG2383 Predicted ATPase, at 1,797,865 to 1,800,888 12651 mRNA_4284: 12652 - KOG2806 Chitinase, at 1,801,203 to 1,803,513 12652 mRNA_4285: 12653 - K18162 NDUFAF5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5, at 1,803,577 to 1,805,345 12653

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,800,377 + 12651 mRNA_4283 0.83 -1.0
1,800,527 + 12651 mRNA_4283 0.88 -0.1
1,800,565 + 12651 mRNA_4283 0.89 -0.8
1,800,583 - 12651 mRNA_4283 0.90 -0.3
1,800,843 - +0.2
1,800,852 + +0.5
1,800,864 + +0.9
1,800,878 + -0.7
1,801,028 - -0.6
1,801,034 + -0.4
1,801,294 + +0.9
1,801,406 - -1.5
1,801,518 + 12652 mRNA_4284 0.14 -0.8
1,801,895 + 12652 mRNA_4284 0.30 +0.3
1,801,937 - 12652 mRNA_4284 0.32 -0.5
1,802,001 - 12652 mRNA_4284 0.35 -1.7
1,802,298 + 12652 mRNA_4284 0.47 -0.4
1,802,491 - 12652 mRNA_4284 0.56 -0.7
1,802,762 + 12652 mRNA_4284 0.67 -0.2
1,803,218 - 12652 mRNA_4284 0.87 -0.1
1,803,340 - +1.0
1,803,473 + -0.8
1,803,482 + +0.5
1,803,507 + +0.3

Or see this region's nucleotide sequence