Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4288

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12655 and 12656 are separated by 129 nucleotides12656 and 12657 are separated by 343 nucleotides mRNA_4287: 12655 - K14559 MPP10 U3 small nucleolar RNA-associated protein MPP10, at 1,808,511 to 1,811,471 12655 mRNA_4288: 12656 - Hypothetical Protein, at 1,811,601 to 1,812,350 12656 mRNA_4289: 12657 - K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase, at 1,812,694 to 1,814,089 12657

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,811,537 + -0.1
1,811,541 - +0.1
1,811,608 - -0.3
1,811,679 + 12656 mRNA_4288 0.10 +1.9
1,811,975 - 12656 mRNA_4288 0.50 -0.1
1,812,022 + 12656 mRNA_4288 0.56 -0.3
1,812,096 + 12656 mRNA_4288 0.66 -0.0
1,812,267 - 12656 mRNA_4288 0.89 +1.5
1,812,425 + +0.6
1,812,544 - +0.1
1,812,545 - -0.1
1,812,548 + +0.2
1,812,570 + -0.4
1,812,578 + -0.6
1,812,613 - -0.8
1,812,614 + -0.2
1,812,616 - -0.6
1,812,616 - +0.8
1,812,704 - -0.2
1,813,132 - 12657 mRNA_4289 0.31 +0.7
1,813,164 + 12657 mRNA_4289 0.34 -0.3

Or see this region's nucleotide sequence