Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4303

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12671 and 12672 are separated by 788 nucleotides mRNA_4303: 12671 - K14005 SEC31 protein transport protein SEC31, at 1,846,529 to 1,852,379 12671 mRNA_4304: 12672 - Hypothetical Protein, at 1,853,168 to 1,855,421 12672

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
1,846,062 + +1.1
1,846,485 - +0.2
1,846,485 - -0.7
1,846,499 + +0.6
1,846,915 + -0.6
1,846,958 - -0.4
1,852,434 - -0.8
1,852,441 - -0.6
1,852,443 + +0.4
1,852,445 - +0.1
1,852,447 - +0.3
1,852,447 - +0.5
1,852,452 - +0.6
1,852,460 + -0.6
1,852,461 - -0.3
1,852,465 + -0.1
1,852,472 + -2.2
1,852,473 + -0.5
1,852,607 + +0.7
1,852,611 - -0.8
1,852,614 + -0.6
1,852,624 - -0.2
1,852,640 + -0.5
1,852,652 - +0.3
1,852,667 + -1.4
1,852,730 - +0.3
1,852,745 + +0.1
1,852,748 + -0.0
1,852,751 + +0.2
1,852,758 - -0.4
1,852,777 - +2.1
1,852,786 - -0.2
1,852,791 + -0.3
1,852,803 + +0.9
1,852,804 - +0.1
1,852,805 + -0.5
1,852,869 + -0.7
1,852,896 - -0.2
1,852,924 + -0.6
1,852,926 - -1.0
1,852,930 - -0.3
1,852,931 - -0.4
1,852,936 - -1.7
1,852,937 - -0.1
1,852,945 - +0.7
1,852,955 + -0.1
1,852,970 + +0.3
1,852,971 + -0.7
1,852,977 + -0.2
1,852,979 + -0.2
1,852,994 - -0.4
1,853,012 + -1.0
1,853,033 - +0.1
1,853,036 + +0.1
1,853,054 - +0.1
1,853,073 + -0.6
1,853,080 + +1.2
1,853,082 + -0.8
1,853,083 + -0.5
1,853,085 - +0.2
1,853,085 + -0.2
1,853,089 - -0.1
1,853,091 + +1.8
1,853,093 - +0.9
1,853,361 - -0.6
1,853,369 - +0.5
1,853,377 - +0.6

Or see this region's nucleotide sequence