Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4305

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12673 and 12674 are separated by 316 nucleotides mRNA_4305: 12673 - SUPERFAMILY--SSF69989, at 1,856,917 to 1,859,154 12673 mRNA_4306: 12674 - Hypothetical Protein, at 1,859,471 to 1,861,932 12674

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,855,965 - -0.2
1,856,387 + +0.4
1,856,429 + +0.3
1,856,825 - +0.1
1,856,851 - +1.7
1,858,016 + 12673 mRNA_4305 0.49 +1.2
1,858,779 - 12673 mRNA_4305 0.83 +0.0
1,858,866 + 12673 mRNA_4305 0.87 -0.8
1,859,037 - +1.0
1,859,047 - -0.1
1,859,695 - +0.5
1,859,724 - 12674 mRNA_4306 0.10 +0.2
1,859,985 - 12674 mRNA_4306 0.21 +0.0

Or see this region's nucleotide sequence