Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4349

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12717 and 12718 are separated by 322 nucleotides mRNA_4349: 12717 - K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e, at 1,969,971 to 1,971,273 12717 mRNA_4350: 12718 - K03635 MOCS2, moaE molybdopterin synthase catalytic subunit, at 1,971,596 to 1,972,460 12718

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
1,969,423 + -0.0
1,969,437 - +0.6
1,969,457 + -1.0
1,969,545 - -1.0
1,969,720 - -0.0
1,969,807 - -1.3
1,969,832 + +0.6
1,970,785 - 12717 mRNA_4349 0.62 +0.2
1,971,295 + -0.3
1,971,360 - +0.0
1,971,392 - -0.2
1,971,469 - -0.3
1,971,507 + +0.0
1,971,684 - 12718 mRNA_4350 0.10 -0.6
1,971,802 - 12718 mRNA_4350 0.24 -0.1
1,971,839 - 12718 mRNA_4350 0.28 -0.5
1,971,956 - 12718 mRNA_4350 0.42 -0.3
1,971,962 + 12718 mRNA_4350 0.42 +0.5
1,972,130 - 12718 mRNA_4350 0.62 -0.1
1,972,217 - 12718 mRNA_4350 0.72 -0.3
1,972,248 + 12718 mRNA_4350 0.75 +0.3

Or see this region's nucleotide sequence