Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4432

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12800 and 12801 are separated by 422 nucleotides mRNA_4432: 12800 - Hypothetical Protein, at 172,079 to 172,706 12800 mRNA_4433: 12801 - Hypothetical Protein, at 173,129 to 173,293 12801

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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171,219 + +0.1
171,617 + -2.6
171,869 + -0.9
171,877 + -1.0
171,878 - -0.5
172,010 - -0.7
172,037 - -0.4
172,152 - 12800 mRNA_4432 0.12 +0.8
172,299 - 12800 mRNA_4432 0.35 +1.1
172,307 + 12800 mRNA_4432 0.36 -1.2
172,434 + 12800 mRNA_4432 0.57 -0.9
172,450 + 12800 mRNA_4432 0.59 +1.7
172,452 + 12800 mRNA_4432 0.59 +0.0
172,453 - 12800 mRNA_4432 0.60 -0.9
172,453 + 12800 mRNA_4432 0.60 +0.2
172,713 + -0.2
172,716 - -0.8
172,722 + -0.6
172,722 + +0.6
172,722 + -1.1
172,765 + +0.1
172,815 + -0.2
172,884 - -0.1
172,893 + -0.5
172,907 + -0.5
172,928 + -0.3
172,938 - +1.2
172,945 + +0.3
172,958 + -1.7
173,001 + +0.2
173,006 - +0.2
173,007 + +0.0
173,044 + +1.1
173,216 - 12801 mRNA_4433 0.53 +0.0
173,483 - -1.1
173,513 - -0.4
173,641 - -1.5

Or see this region's nucleotide sequence