Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4445

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12812 and 12813 are separated by 126 nucleotides12813 and 12814 are separated by 256 nucleotides mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192,808 to 197,198 12812 mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197,325 to 199,939 12813 mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200,196 to 203,838 12814

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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196,594 + 12812 mRNA_4444 0.86 +0.5
197,134 - +2.2
197,250 - -0.1
197,262 + +0.4
197,283 - -0.4
197,422 - -0.1
197,429 + -0.6
197,441 - -0.6
197,443 - +0.5
197,449 - +0.5
197,592 + 12813 mRNA_4445 0.10 +0.0
197,593 - 12813 mRNA_4445 0.10 +0.7
197,614 - 12813 mRNA_4445 0.11 -0.0
197,614 - 12813 mRNA_4445 0.11 -0.2
197,746 + 12813 mRNA_4445 0.16 -1.0
197,751 - 12813 mRNA_4445 0.16 -0.8
197,757 + 12813 mRNA_4445 0.17 +0.1
198,038 - 12813 mRNA_4445 0.27 +1.1
198,232 - 12813 mRNA_4445 0.35 -0.4
198,332 - 12813 mRNA_4445 0.39 +0.3
198,478 - 12813 mRNA_4445 0.44 +0.8
198,493 + 12813 mRNA_4445 0.45 +0.9
198,595 - 12813 mRNA_4445 0.49 +0.0
198,650 - 12813 mRNA_4445 0.51 -1.0
198,789 + 12813 mRNA_4445 0.56 +0.0
198,901 - 12813 mRNA_4445 0.60 +0.3
199,015 - 12813 mRNA_4445 0.65 +0.3
199,127 + 12813 mRNA_4445 0.69 -1.9
199,375 - 12813 mRNA_4445 0.78 -0.1
199,380 - 12813 mRNA_4445 0.79 -0.1
199,632 + 12813 mRNA_4445 0.88 -2.0
200,224 - -0.3
200,296 - -0.3
200,365 + +0.9
200,621 + 12814 mRNA_4446 0.12 -1.2
200,657 + 12814 mRNA_4446 0.13 -1.0
200,675 + 12814 mRNA_4446 0.13 -0.1

Or see this region's nucleotide sequence