Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4463

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12830 and 12831 are separated by 706 nucleotides12831 and 12832 are separated by 397 nucleotides mRNA_4462: 12830 - Hypothetical Protein, at 241,842 to 242,730 12830 mRNA_4463: 12831 - Hypothetical Protein, at 243,437 to 244,042 12831 mRNA_4464: 12832 - Hypothetical Protein, at 244,440 to 244,979 12832

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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242,437 + 12830 mRNA_4462 0.67 -0.6
242,454 + 12830 mRNA_4462 0.69 -0.5
242,465 - 12830 mRNA_4462 0.70 +0.4
242,471 - 12830 mRNA_4462 0.71 -0.7
242,477 - 12830 mRNA_4462 0.71 +0.9
242,478 + 12830 mRNA_4462 0.72 -0.3
242,495 + 12830 mRNA_4462 0.73 +0.4
242,637 + 12830 mRNA_4462 0.89 +0.5
242,638 - 12830 mRNA_4462 0.90 -0.8
242,649 - -0.7
242,651 - +0.6
242,651 - -2.5
242,671 + -1.0
242,676 + -0.3
242,679 + +0.0
242,706 + -0.6
242,733 - +0.8
242,776 - -1.0
242,782 + -0.5
242,793 + -1.0
242,842 + -0.2
242,861 - -0.9
242,874 + +0.0
242,902 - +0.0
242,911 - +0.5
242,925 - +1.7
242,934 - +1.8
242,934 - +0.9
242,936 - +0.1
242,938 + +0.3
242,957 - -1.1
243,146 + +0.6
243,211 + -0.6
243,212 - -0.4
243,220 - -0.2
243,225 + -0.0
243,227 - +1.7
243,228 - -0.3
243,235 + +0.2
243,278 - -1.6
243,366 - -0.2
243,367 + -1.3
243,379 + +0.0
243,381 + +0.2
243,384 - -0.1
243,390 + +0.8
243,393 + -0.2
243,409 - -1.7
243,520 - 12831 mRNA_4463 0.14 +0.6
243,541 - 12831 mRNA_4463 0.17 +0.0
243,592 - 12831 mRNA_4463 0.26 -1.3
243,633 - 12831 mRNA_4463 0.32 -0.8
243,677 - 12831 mRNA_4463 0.40 +0.3
243,683 + 12831 mRNA_4463 0.41 -0.7
243,689 - 12831 mRNA_4463 0.42 -0.2
243,708 - 12831 mRNA_4463 0.45 -0.7
243,710 - 12831 mRNA_4463 0.45 -0.2
243,744 - 12831 mRNA_4463 0.51 -0.3
243,830 + 12831 mRNA_4463 0.65 +0.5
243,834 - 12831 mRNA_4463 0.66 +0.5
243,835 - 12831 mRNA_4463 0.66 +0.6
243,847 - 12831 mRNA_4463 0.68 -0.5
243,915 + 12831 mRNA_4463 0.79 +0.7
243,928 + 12831 mRNA_4463 0.81 -0.4
243,964 + 12831 mRNA_4463 0.87 +0.5
243,975 - 12831 mRNA_4463 0.89 -0.2
243,991 + -0.3
244,008 + +0.0
244,030 + +1.2
244,031 + -0.2
244,039 + +0.5
244,039 + -0.5
244,049 - -0.9
244,059 + +0.1
244,062 + -2.9
244,113 - -2.4
244,118 + -0.6
244,134 + -0.7
244,195 - -0.6
244,420 + +2.2
244,427 + -0.2
244,435 + +0.4
244,449 + +0.2
244,459 - -1.1
244,504 - 12832 mRNA_4464 0.12 +0.3
244,757 - 12832 mRNA_4464 0.59 -0.5
244,937 + -0.3
245,026 - -0.9

Or see this region's nucleotide sequence