Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4519

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12886 and 12887 are separated by 979 nucleotides12887 and 12888 are separated by 887 nucleotides mRNA_4518: 12886 - Hypothetical Protein, at 369,280 to 370,567 12886 mRNA_4519: 12887 - Hypothetical Protein, at 371,547 to 373,000 12887 mRNA_4520: 12888 - Hypothetical Protein, at 373,888 to 374,415 12888

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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370,870 - +0.2
371,323 + -1.5
371,418 + -0.6
371,990 + 12887 mRNA_4519 0.30 -2.4
372,233 - 12887 mRNA_4519 0.47 -0.8
372,297 + 12887 mRNA_4519 0.52 +0.1
372,315 - 12887 mRNA_4519 0.53 +0.4
372,315 - 12887 mRNA_4519 0.53 +0.6
372,350 - 12887 mRNA_4519 0.55 -0.4
372,563 - 12887 mRNA_4519 0.70 +0.1
372,564 - 12887 mRNA_4519 0.70 +0.8
372,604 - 12887 mRNA_4519 0.73 +1.5
372,707 - 12887 mRNA_4519 0.80 +0.1
372,708 - 12887 mRNA_4519 0.80 -0.3
372,718 - 12887 mRNA_4519 0.81 +0.3
372,721 + 12887 mRNA_4519 0.81 -1.2
372,742 - 12887 mRNA_4519 0.82 +0.7
372,847 + 12887 mRNA_4519 0.89 +0.3
372,871 - -2.5
372,878 - -0.4
372,883 + +0.6
372,895 + +0.3
372,911 - +0.9
372,919 - +0.3
372,920 + -1.6
372,924 + -0.0
372,928 + +0.6
373,045 + -0.4
373,054 + +0.1
373,073 - +0.1
373,082 + -0.0
373,085 - -0.3
373,102 + -0.5
373,185 - -0.2
373,205 - -0.5
373,227 - -0.8
373,255 + -1.1
373,445 - -1.2
373,543 - +0.3
373,569 + +0.3
373,590 + +1.8
373,593 - +0.9
373,601 + -0.6
373,618 - +0.4
373,635 + +0.1
373,695 - -0.8
373,761 - -0.2
373,778 - -0.6
373,813 + +0.9
373,951 + 12888 mRNA_4520 0.12 +0.0

Or see this region's nucleotide sequence