Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4644

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13011 and 13012 are separated by 944 nucleotides13012 and 13013 are separated by 422 nucleotides mRNA_4643: 13011 - Hypothetical Protein, at 675,850 to 678,539 13011 mRNA_4644: 13012 - Hypothetical Protein, at 679,484 to 680,110 13012 mRNA_4645: 13013 - Hypothetical Protein, at 680,533 to 681,409 13013

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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679,080 - +0.1
679,892 - 13012 mRNA_4644 0.65 -2.3
679,921 - 13012 mRNA_4644 0.70 -0.6
680,042 - 13012 mRNA_4644 0.89 -1.2
680,176 - -0.3
680,199 - +0.3
680,221 - +0.2
680,225 + +0.2
680,227 - -0.4
680,233 + -0.5
680,258 - -0.2
680,349 + -0.8
680,351 - -0.3
680,363 - -0.3
680,366 + -0.5
680,368 + -0.7
680,369 - -0.6
680,376 + +1.1
680,418 + -0.9
680,544 + +0.2
680,551 + -0.2
680,571 - +0.0
680,625 + 13013 mRNA_4645 0.10 -2.0

Or see this region's nucleotide sequence