Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4728

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13095 and 13096 are separated by 70 nucleotides13096 and 13097 are separated by 200 nucleotides mRNA_4727: 13095 - Hypothetical Protein, at 868,153 to 868,831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868,902 to 870,638 13096 mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870,839 to 873,938 13097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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867,923 - -2.2
868,012 - -0.4
868,303 + 13095 mRNA_4727 0.22 -0.5
868,448 + 13095 mRNA_4727 0.43 +0.7
868,595 + 13095 mRNA_4727 0.65 +0.9
868,598 + 13095 mRNA_4727 0.66 -1.8
868,608 - 13095 mRNA_4727 0.67 -0.6
868,615 - 13095 mRNA_4727 0.68 -0.6
868,719 - 13095 mRNA_4727 0.83 -0.2
868,727 - 13095 mRNA_4727 0.85 +2.2
868,799 + -0.8
868,864 - -1.5
868,873 - -0.7
868,885 + +1.4
869,138 - 13096 mRNA_4728 0.14 -0.1
869,611 - 13096 mRNA_4728 0.41 +1.0
869,768 - 13096 mRNA_4728 0.50 -0.3
870,449 - 13096 mRNA_4728 0.89 +0.3
870,474 + -0.1
870,592 + -1.6
870,761 - -0.3
870,763 + +0.1
870,777 + +0.1
871,038 - +0.9
871,083 - +1.3
871,092 + -0.9
871,152 - 13097 mRNA_4729 0.10 +0.2
871,208 - 13097 mRNA_4729 0.12 +1.2
871,535 - 13097 mRNA_4729 0.22 +1.0

Or see this region's nucleotide sequence