Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4761

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13128 and 13129 are separated by 315 nucleotides mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941,332 to 944,070 13128 mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944,386 to 945,694 13129

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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943,519 - 13128 mRNA_4760 0.80 -0.2
943,828 + -2.1
943,971 + -0.1
944,076 - -0.4
944,157 - -0.4
944,246 + -0.0
944,250 - +0.7
944,263 - +0.1
944,268 + +0.7
944,279 + +0.0
944,415 - -0.2
945,019 - 13129 mRNA_4761 0.48 +1.1
945,832 - -0.7
945,837 - -0.3
945,842 + +0.4
946,099 - +1.4
946,168 + -0.2
946,173 + -0.2
946,292 - -0.0
946,445 - -0.1
946,516 + -0.9
946,549 - -0.5

Or see this region's nucleotide sequence