Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4764

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13132 and 13133 are separated by 279 nucleotides mRNA_4764: 13132 - K12842 SR140 U2-associated protein SR140, at 954,648 to 957,720 13132 mRNA_4765: 13133 - SUPERFAMILY--SSF52058, at 958,000 to 961,527 13133

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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953,654 - +1.1
953,828 + -0.4
953,979 + -0.3
954,094 - +0.2
954,114 - -1.8
954,119 - -0.6
954,125 - -1.5
954,127 + -1.2
954,129 + -0.1
954,264 + +0.4
954,281 - +0.5
954,305 + +0.2
954,455 + -1.0
954,560 + -1.2
955,866 + 13132 mRNA_4764 0.40 -0.1
956,118 + 13132 mRNA_4764 0.48 -0.9
956,911 + 13132 mRNA_4764 0.74 -0.6
957,209 + 13132 mRNA_4764 0.83 +0.2
957,506 + -0.2
957,617 - +0.3
957,746 + +1.3
957,789 - +0.9
957,789 - +0.7
957,873 - -0.3
957,880 - -1.2
957,915 - +1.1
957,936 + +0.3
958,033 + -0.6
958,213 + +0.7
958,218 - -0.6
958,225 + -0.3
958,228 - -0.7
958,234 - +0.1
958,547 + 13133 mRNA_4765 0.16 +0.6
958,656 - 13133 mRNA_4765 0.19 +0.4
958,679 + 13133 mRNA_4765 0.19 -0.5

Or see this region's nucleotide sequence