Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4794

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13161 and 13162 are separated by 352 nucleotides13162 and 13163 are separated by 353 nucleotides mRNA_4793: 13161 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 1,025,868 to 1,027,318 13161 mRNA_4794: 13162 - Hypothetical Protein, at 1,027,671 to 1,028,225 13162 mRNA_4795: 13163 - Hypothetical Protein, at 1,028,579 to 1,029,667 13163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,026,783 + 13161 mRNA_4793 0.63 -0.0
1,026,794 + 13161 mRNA_4793 0.64 -0.4
1,026,934 - 13161 mRNA_4793 0.73 -1.5
1,026,937 + 13161 mRNA_4793 0.74 -0.8
1,027,018 + 13161 mRNA_4793 0.79 +0.1
1,027,573 - -0.5
1,027,796 + 13162 mRNA_4794 0.23 +0.9
1,028,068 + 13162 mRNA_4794 0.72 -0.2
1,028,114 + 13162 mRNA_4794 0.80 -0.4
1,028,518 - -1.0
1,028,524 + -0.6
1,028,527 - -0.1
1,028,698 - 13163 mRNA_4795 0.11 -0.2
1,028,965 - 13163 mRNA_4795 0.35 +0.5
1,029,098 + 13163 mRNA_4795 0.48 -0.2
1,029,162 + 13163 mRNA_4795 0.54 -1.3

Or see this region's nucleotide sequence