Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4805

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13172 and 13173 are separated by 912 nucleotides mRNA_4804: 13172 - HMMPfam-PAP2 superfamily-PF01569, at 1,052,365 to 1,054,205 13172 mRNA_4805: 13173 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,055,118 to 1,056,196 13173

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,054,121 + -0.1
1,054,128 + -0.8
1,054,142 + -1.3
1,054,243 + -0.5
1,054,251 + -0.9
1,054,253 + -0.8
1,054,258 - +1.0
1,054,258 - +0.1
1,054,261 + -0.2
1,054,263 - +0.2
1,054,269 - +0.7
1,054,277 + -0.6
1,054,283 + +0.5
1,054,413 + -0.2
1,054,414 + -1.0
1,054,423 - +0.3
1,054,426 - +0.8
1,054,440 + +0.1
1,054,556 - -0.1
1,054,575 - +0.3
1,054,703 - -1.0
1,054,717 + -0.1
1,054,719 + +1.0
1,054,722 - -0.7
1,054,724 + +1.0
1,054,728 - +0.1
1,054,741 - +0.2
1,054,743 - +0.6
1,054,778 - -0.2
1,054,786 - -0.6
1,054,788 + +0.2
1,054,877 - -1.2
1,054,913 - -0.1
1,054,922 + -0.2
1,055,328 - 13173 mRNA_4805 0.19 -0.0
1,055,618 + 13173 mRNA_4805 0.46 +1.0
1,055,786 - 13173 mRNA_4805 0.62 +0.8
1,055,903 + 13173 mRNA_4805 0.73 +0.1
1,055,905 + 13173 mRNA_4805 0.73 +0.4
1,056,177 - +2.5
1,056,348 + -1.0
1,056,491 + -1.8
1,056,638 - -0.5
1,056,787 + -0.1
1,056,797 + +0.1
1,056,803 + +0.2
1,056,901 - -0.6
1,057,067 + -0.1
1,057,089 + -0.3
1,057,100 - -0.2
1,057,113 - +0.5

Or see this region's nucleotide sequence