Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4820

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13188 and 13189 are separated by 327 nucleotides mRNA_4820: 13188 - Hypothetical Protein, at 1,088,296 to 1,089,046 13188 mRNA_4821: 13189 - HMMPfam-Arylsulfotransferase (ASST)-PF14269, at 1,089,374 to 1,091,580 13189

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
1,087,381 - -0.7
1,087,400 - -0.6
1,087,409 - -1.6
1,087,546 + -0.8
1,087,681 + -2.5
1,087,815 - +0.3
1,087,976 + +0.8
1,087,978 + -0.3
1,088,094 + +0.6
1,088,271 - -2.8
1,088,540 + 13188 mRNA_4820 0.32 -0.2
1,088,549 - 13188 mRNA_4820 0.34 +0.1
1,088,559 + 13188 mRNA_4820 0.35 -0.3
1,088,719 - 13188 mRNA_4820 0.56 -0.2
1,088,842 + 13188 mRNA_4820 0.73 +0.7
1,088,880 + 13188 mRNA_4820 0.78 -0.2
1,089,006 + -0.3
1,089,023 - -0.4
1,089,568 - -0.1
1,089,774 - 13189 mRNA_4821 0.18 -0.4
1,089,884 - 13189 mRNA_4821 0.23 -0.7

Or see this region's nucleotide sequence