Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4851

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13218 and 13219 are separated by 288 nucleotides13219 and 13220 are separated by 156 nucleotides mRNA_4850: 13218 - K02309 DBF4 regulatory subunit for Cdc7p protein kinase, at 1,143,914 to 1,146,258 13218 mRNA_4851: 13219 - K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1, at 1,146,547 to 1,149,479 13219 mRNA_4852: 13220 - Hypothetical Protein, at 1,149,636 to 1,152,739 13220

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,146,239 - -0.5
1,146,488 - +0.0
1,146,496 - -0.2
1,146,530 + -1.0
1,146,537 - -2.4
1,146,540 + -0.3
1,147,716 - 13219 mRNA_4851 0.40 +1.2
1,147,738 - 13219 mRNA_4851 0.41 +1.3
1,148,144 - 13219 mRNA_4851 0.54 +0.1
1,148,743 - 13219 mRNA_4851 0.75 -0.0
1,149,121 - 13219 mRNA_4851 0.88 -0.2
1,149,121 - 13219 mRNA_4851 0.88 -2.3
1,149,153 - 13219 mRNA_4851 0.89 -0.2
1,149,266 + -0.9
1,149,274 - +0.5
1,149,283 - -0.4
1,149,426 + +0.2
1,149,427 - +0.8
1,149,476 + +1.2
1,149,560 - -1.3
1,149,560 - +1.0
1,149,570 - +0.5
1,149,599 + +0.5
1,149,694 + +1.0
1,149,717 - -0.5
1,149,718 + -0.1
1,149,760 - -1.2
1,150,034 + 13220 mRNA_4852 0.13 -0.2
1,150,158 + 13220 mRNA_4852 0.17 -1.6
1,150,164 - 13220 mRNA_4852 0.17 +1.7
1,150,326 + 13220 mRNA_4852 0.22 -0.3
1,150,345 - 13220 mRNA_4852 0.23 -0.5
1,150,438 - 13220 mRNA_4852 0.26 +0.2
1,150,460 + 13220 mRNA_4852 0.27 +0.0
1,150,469 - 13220 mRNA_4852 0.27 +0.5

Or see this region's nucleotide sequence