Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4869

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13236 and 13237 are separated by 543 nucleotides13237 and 13238 are separated by 466 nucleotides mRNA_4868: 13236 - HMMPfam-DASH complex subunit Dad1-PF08649, at 1,179,404 to 1,180,039 13236 mRNA_4869: 13237 - K03364 CDH1 cell division cycle 20-like protein 1, cofactor of APC complex, at 1,180,583 to 1,182,754 13237 mRNA_4870: 13238 - KOG2533 Permease of the major facilitator superfamily, at 1,183,221 to 1,185,751 13238

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,179,849 + 13236 mRNA_4868 0.70 -1.4
1,179,989 + -0.4
1,180,123 - -0.8
1,180,256 - -1.2
1,180,257 + +0.2
1,180,263 + -0.4
1,180,287 + -0.8
1,180,417 - -0.6
1,180,422 + +0.1
1,180,428 + +0.7
1,180,430 - -0.8
1,180,570 - +0.3
1,180,727 - -0.7
1,180,740 + +1.4
1,180,856 + 13237 mRNA_4869 0.13 +0.4
1,181,112 + 13237 mRNA_4869 0.24 +0.5
1,181,427 - 13237 mRNA_4869 0.39 -0.8
1,181,590 + 13237 mRNA_4869 0.46 -0.4
1,181,642 - 13237 mRNA_4869 0.49 -2.8
1,181,927 + 13237 mRNA_4869 0.62 -0.8
1,182,005 - 13237 mRNA_4869 0.65 +0.8
1,182,340 - 13237 mRNA_4869 0.81 -2.1
1,182,722 - -0.9

Or see this region's nucleotide sequence