Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4908

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13274 and 13275 are separated by 288 nucleotides13275 and 13276 are separated by 281 nucleotides13276 and 13277 are separated by 495 nucleotides mRNA_4906: 13274 - K03540 RPR2, RPP21 ribonuclease P protein subunit RPR2, at 1,273,469 to 1,274,303 13274 mRNA_4907: 13275 - HMMPfam-Cytochrome c oxidase subunit VIIc-PF02935,SUPERFAMILY--SSF81427, at 1,274,592 to 1,274,946 13275 mRNA_4908: 13276 - K15163 SRB8, MED12 mediator of RNA polymerase II transcription subunit 12, fungi type, at 1,275,228 to 1,281,484 13276 mRNA_4909: 13277 - KOG1339 Aspartyl protease, at 1,281,980 to 1,284,451 13277

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,274,371 + -0.5
1,274,392 + -2.0
1,274,521 + -0.4
1,274,525 + -2.4
1,274,853 + 13275 mRNA_4907 0.74 -2.0
1,275,160 + -0.7
1,275,421 + +0.2
1,275,721 + -0.8
1,275,835 - -1.0
1,276,019 - 13276 mRNA_4908 0.13 +0.8
1,276,316 - 13276 mRNA_4908 0.17 -0.6
1,276,838 + 13276 mRNA_4908 0.26 -1.2
1,276,892 + 13276 mRNA_4908 0.27 -0.9
1,276,898 + 13276 mRNA_4908 0.27 -1.2
1,277,235 - 13276 mRNA_4908 0.32 -0.2
1,277,471 + 13276 mRNA_4908 0.36 -1.0
1,277,596 - 13276 mRNA_4908 0.38 +0.3
1,277,609 - 13276 mRNA_4908 0.38 -1.4
1,278,066 + 13276 mRNA_4908 0.45 +1.1
1,278,360 - 13276 mRNA_4908 0.50 -0.7
1,278,636 - 13276 mRNA_4908 0.54 -0.3
1,278,801 + 13276 mRNA_4908 0.57 -0.4
1,278,826 - 13276 mRNA_4908 0.58 +0.2
1,279,060 - 13276 mRNA_4908 0.61 +2.2
1,279,521 + 13276 mRNA_4908 0.69 -0.6
1,279,555 - 13276 mRNA_4908 0.69 -2.4
1,279,576 + 13276 mRNA_4908 0.69 -0.9
1,279,659 - 13276 mRNA_4908 0.71 +1.7
1,279,660 - 13276 mRNA_4908 0.71 -0.3
1,279,849 - 13276 mRNA_4908 0.74 -0.9
1,279,867 + 13276 mRNA_4908 0.74 -0.7
1,279,950 + 13276 mRNA_4908 0.75 -0.1
1,279,955 - 13276 mRNA_4908 0.76 +0.2
1,279,963 + 13276 mRNA_4908 0.76 +2.2
1,280,240 + 13276 mRNA_4908 0.80 -0.6
1,280,392 - 13276 mRNA_4908 0.83 -0.2
1,280,436 - 13276 mRNA_4908 0.83 -0.3
1,280,517 - 13276 mRNA_4908 0.85 +1.0
1,280,538 - 13276 mRNA_4908 0.85 +2.2
1,280,681 + 13276 mRNA_4908 0.87 -0.6
1,280,997 - -2.4
1,281,121 - +1.0
1,281,136 + -1.0
1,281,264 - +0.4
1,281,276 + -0.7
1,281,531 + -0.1
1,281,532 - -0.2
1,281,541 - +0.3
1,281,543 - -0.0
1,281,545 - +0.5
1,281,554 + -0.5
1,281,555 - -0.1
1,281,560 - -0.2
1,281,702 - -0.2
1,281,707 - -0.6
1,281,712 + -0.6
1,281,714 - +1.0
1,281,714 - -1.4
1,281,716 + +0.8
1,281,717 + -1.3
1,281,718 + -0.9
1,281,758 - -0.6
1,281,758 - -0.4
1,281,760 - -0.5
1,281,760 + -1.0
1,281,760 + -0.1
1,281,765 - -1.2
1,281,773 - +0.4
1,281,779 + -0.1
1,281,789 + -0.4
1,281,795 + +0.2
1,281,890 - -0.1
1,282,041 - -0.4
1,282,045 - +0.2
1,282,049 + -1.1
1,282,049 - -0.3
1,282,051 + -0.2
1,282,160 - -0.3
1,282,194 - -0.3
1,282,201 - -0.9
1,282,204 + -0.6
1,282,205 - +1.4
1,282,339 - 13277 mRNA_4909 0.15 +1.3
1,282,352 - 13277 mRNA_4909 0.15 +1.6
1,282,370 + 13277 mRNA_4909 0.16 -0.3

Or see this region's nucleotide sequence