Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4926

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13293 and 13294 are separated by 87 nucleotides13294 and 13295 are separated by 201 nucleotides mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1,324,848 to 1,328,229 13293 mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1,328,317 to 1,334,558 13294 mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1,334,760 to 1,336,928 13295

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,328,381 + -0.2
1,328,395 + +0.4
1,328,446 + -0.8
1,328,474 - -0.9
1,328,474 - -0.3
1,328,606 - -0.6
1,328,700 - -0.1
1,328,750 - +0.5
1,328,752 - +1.5
1,328,772 + -0.0
1,328,773 + +0.0
1,328,806 + -0.6
1,328,810 + -0.9
1,328,811 - +0.3
1,328,847 + -0.1
1,328,851 - -0.1
1,328,900 + -0.5
1,328,922 + +0.1
1,328,927 + -0.1
1,328,960 - 13294 mRNA_4926 0.10 +0.3
1,328,973 - 13294 mRNA_4926 0.11 +0.3
1,328,988 + 13294 mRNA_4926 0.11 -0.8
1,329,029 - 13294 mRNA_4926 0.11 -1.0
1,329,049 - 13294 mRNA_4926 0.12 -0.2
1,329,056 + 13294 mRNA_4926 0.12 +0.0
1,329,062 + 13294 mRNA_4926 0.12 +0.8
1,329,070 - 13294 mRNA_4926 0.12 -0.3
1,329,074 - 13294 mRNA_4926 0.12 +0.2
1,329,093 + 13294 mRNA_4926 0.12 -0.4
1,329,095 + 13294 mRNA_4926 0.12 -0.8
1,329,143 - 13294 mRNA_4926 0.13 +0.1
1,329,371 - 13294 mRNA_4926 0.17 +0.0
1,329,476 - 13294 mRNA_4926 0.19 +0.1
1,329,518 - 13294 mRNA_4926 0.19 +0.0
1,329,532 + 13294 mRNA_4926 0.19 -1.3
1,329,566 + 13294 mRNA_4926 0.20 -0.3
1,329,643 + 13294 mRNA_4926 0.21 +0.3
1,329,658 + 13294 mRNA_4926 0.21 -0.3
1,329,667 - 13294 mRNA_4926 0.22 +0.7
1,329,837 - 13294 mRNA_4926 0.24 -0.1
1,329,876 + 13294 mRNA_4926 0.25 -1.7
1,329,959 + 13294 mRNA_4926 0.26 -0.9
1,329,959 + 13294 mRNA_4926 0.26 +0.3
1,330,025 + 13294 mRNA_4926 0.27 -0.9
1,330,143 - 13294 mRNA_4926 0.29 -0.6
1,330,409 - 13294 mRNA_4926 0.34 -0.7
1,332,479 + 13294 mRNA_4926 0.67 +0.3
1,332,653 + 13294 mRNA_4926 0.69 -1.5
1,333,640 + 13294 mRNA_4926 0.85 -1.0
1,334,352 + -0.1
1,334,490 - -1.2
1,334,496 + +1.1
1,334,502 + +0.2
1,334,509 - -0.7
1,334,510 - +1.3
1,334,510 + -0.3
1,334,516 - +0.6
1,334,517 - -0.4
1,334,519 + -1.5
1,334,519 - +0.6
1,334,522 + -1.6
1,334,524 + +0.9
1,334,526 + -1.2
1,334,528 + +0.9
1,334,584 - +1.2
1,334,694 - +0.6
1,334,699 + -0.3
1,334,703 + +0.8
1,334,705 + +1.1
1,334,719 + -0.8
1,334,766 - +1.8
1,334,833 - -2.0
1,334,865 - +0.1
1,334,867 - -0.5
1,334,879 + -0.3
1,334,881 - +0.2
1,334,892 - -0.3
1,334,948 - -0.0
1,335,010 - 13295 mRNA_4927 0.12 -0.5
1,335,161 - 13295 mRNA_4927 0.18 +0.7
1,335,311 + 13295 mRNA_4927 0.25 +0.2

Or see this region's nucleotide sequence