Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4936

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13303 and 13304 are separated by 166 nucleotides13304 and 13305 are separated by 364 nucleotides mRNA_4935: 13303 - BLAST salivary gland secretion 1 [Moniliophthora roreri..., at 1,356,416 to 1,359,547 13303 mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1,359,714 to 1,362,398 13304 mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1,362,763 to 1,363,546 13305

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
1,359,138 - 13303 mRNA_4935 0.87 +0.8
1,359,182 - 13303 mRNA_4935 0.88 -0.2
1,359,374 - -0.1
1,359,392 + +0.8
1,359,692 - +0.1
1,359,806 - -0.5
1,359,843 + -0.0
1,359,882 - -0.2
1,359,926 - -0.3
1,359,957 + +1.0
1,360,255 - 13304 mRNA_4936 0.20 -0.4
1,360,387 + 13304 mRNA_4936 0.25 +0.1
1,360,586 + 13304 mRNA_4936 0.32 +0.4
1,360,809 + 13304 mRNA_4936 0.41 +1.3
1,361,028 - 13304 mRNA_4936 0.49 +1.5
1,361,736 - 13304 mRNA_4936 0.75 -1.8
1,361,750 - 13304 mRNA_4936 0.76 -0.6
1,361,851 + 13304 mRNA_4936 0.80 -0.7
1,361,890 + 13304 mRNA_4936 0.81 -0.7
1,362,019 - 13304 mRNA_4936 0.86 -0.1
1,362,033 + 13304 mRNA_4936 0.86 -0.3
1,362,109 - 13304 mRNA_4936 0.89 -2.0
1,362,150 + -0.3
1,362,184 - -0.3
1,362,208 - +0.2
1,362,323 - -0.4
1,362,340 + +0.6
1,362,347 - -0.8
1,362,477 + -0.4
1,362,477 - +1.0
1,362,640 - +0.0
1,362,755 + -0.1

Or see this region's nucleotide sequence