Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4975

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13342 and 13343 are separated by 350 nucleotides mRNA_4974: 13342 - Hypothetical Protein, at 1,453,896 to 1,454,599 13342 mRNA_4975: 13343 - Hypothetical Protein, at 1,454,950 to 1,456,101 13343

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,454,164 + 13342 mRNA_4974 0.38 +1.1
1,454,169 + 13342 mRNA_4974 0.39 +0.4
1,454,186 + 13342 mRNA_4974 0.41 -0.7
1,454,195 - 13342 mRNA_4974 0.42 -0.9
1,454,219 - 13342 mRNA_4974 0.46 -0.0
1,454,285 + 13342 mRNA_4974 0.55 -0.4
1,454,341 - 13342 mRNA_4974 0.63 +0.3
1,454,354 - 13342 mRNA_4974 0.65 +0.8
1,454,381 - 13342 mRNA_4974 0.69 -0.2
1,454,407 + 13342 mRNA_4974 0.73 +0.5
1,454,479 - 13342 mRNA_4974 0.83 -0.9
1,454,498 - 13342 mRNA_4974 0.86 -1.2
1,454,504 - 13342 mRNA_4974 0.86 -0.3
1,454,505 + 13342 mRNA_4974 0.87 +0.0
1,454,507 - 13342 mRNA_4974 0.87 -0.2
1,454,512 + 13342 mRNA_4974 0.88 -0.1
1,454,522 - 13342 mRNA_4974 0.89 +1.1
1,454,531 + -0.4
1,454,563 - -0.4
1,454,671 - -0.4
1,454,672 - -0.5
1,454,676 - +0.1
1,454,695 + +0.2
1,454,713 + -1.2
1,454,769 - +0.2
1,454,772 - +0.5
1,454,773 - +0.1
1,454,776 - +0.1
1,454,776 - -1.4
1,454,778 - -0.1
1,454,779 + +2.6
1,454,785 + +0.6
1,454,788 - -2.1
1,454,794 + -0.3
1,454,804 - +0.0
1,454,806 + -1.2
1,454,807 - -0.7
1,454,815 - +0.2
1,454,827 - -1.4
1,454,828 + -0.3
1,454,832 - -0.1
1,454,832 + -0.2
1,454,833 + -0.2
1,454,901 - -0.5
1,454,965 + -0.3
1,454,976 + -0.1
1,454,981 - +0.4
1,455,171 - 13343 mRNA_4975 0.19 +0.2
1,455,274 + 13343 mRNA_4975 0.28 +0.5
1,455,395 + 13343 mRNA_4975 0.39 +1.0
1,455,586 + 13343 mRNA_4975 0.55 -0.0
1,455,726 + 13343 mRNA_4975 0.67 +1.1
1,456,335 + -0.7
1,456,908 + +0.2

Or see this region's nucleotide sequence