Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5005

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13373 and 13374 are separated by 269 nucleotides mRNA_5005: 13373 - K10956 SEC61A protein transport protein SEC61 subunit alpha, at 1,522,802 to 1,524,731 13373 mRNA_5006: 13374 - K20299 VPS53 vacuolar protein sorting-associated protein 53, at 1,525,001 to 1,528,336 13374

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,522,417 - -0.4
1,522,445 - -0.0
1,522,460 + +0.2
1,522,557 - -0.2
1,522,587 - +0.0
1,522,596 + +1.1
1,522,597 - -0.8
1,522,597 + -0.6
1,522,599 + -0.3
1,522,603 + -0.2
1,522,612 + -1.4
1,522,621 + +0.5
1,522,621 + +0.5
1,522,625 - +2.1
1,522,642 + -0.5
1,522,774 - +0.5
1,523,174 + 13373 mRNA_5005 0.19 -0.8
1,524,802 - -0.2
1,524,813 + -0.8
1,524,945 - +1.4
1,525,098 - -0.3
1,525,109 + -0.9
1,525,125 + -0.6
1,525,264 - -0.7
1,525,462 - 13374 mRNA_5006 0.14 +0.5

Or see this region's nucleotide sequence