Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5070

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13437 and 13438 are separated by 233 nucleotides13438 and 13439 are separated by 318 nucleotides mRNA_5069: 13437 - KOG2317 Putative translation initiation inhibitor UK114/IBM1, at 1,676,038 to 1,676,601 13437 mRNA_5070: 13438 - KOG3346 Phosphatidylethanolamine binding protein, at 1,676,835 to 1,677,879 13438 mRNA_5071: 13439 - KOG3038 Histone acetyltransferase SAGA associated factor SGF29, at 1,678,198 to 1,679,552 13439

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,675,950 - -0.6
1,675,972 + -0.7
1,675,979 - -0.8
1,676,393 + 13437 mRNA_5069 0.63 -0.1
1,676,395 - 13437 mRNA_5069 0.63 -0.9
1,676,629 - -0.0
1,676,678 + +0.1
1,676,914 - -1.4
1,677,075 - 13438 mRNA_5070 0.23 -0.9
1,677,089 - 13438 mRNA_5070 0.24 -0.4
1,677,966 - +0.3
1,677,983 - +1.0
1,678,115 - +0.6
1,678,127 + +1.2
1,678,434 - 13439 mRNA_5071 0.17 +1.0
1,678,438 + 13439 mRNA_5071 0.18 +0.2
1,678,449 - 13439 mRNA_5071 0.19 +0.3
1,678,529 - 13439 mRNA_5071 0.24 -0.3
1,678,582 + 13439 mRNA_5071 0.28 +0.5
1,678,712 + 13439 mRNA_5071 0.38 +0.4

Or see this region's nucleotide sequence