Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5110

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13477 and 13478 are separated by 262 nucleotides13478 and 13479 are separated by 263 nucleotides mRNA_5109: 13477 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 1,781,885 to 1,783,353 13477 mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1,783,616 to 1,785,108 13478 mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1,785,372 to 1,788,381 13479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,783,598 + +0.9
1,783,743 - -1.3
1,783,866 - 13478 mRNA_5110 0.17 -0.2
1,784,057 + 13478 mRNA_5110 0.30 +0.6
1,784,158 - 13478 mRNA_5110 0.36 +1.2
1,784,166 + 13478 mRNA_5110 0.37 +0.4
1,784,477 - 13478 mRNA_5110 0.58 -0.4
1,784,754 + 13478 mRNA_5110 0.76 -0.3
1,784,901 - 13478 mRNA_5110 0.86 +1.5
1,785,008 - -0.8
1,785,877 + 13479 mRNA_5111 0.17 -1.1
1,785,900 - 13479 mRNA_5111 0.18 -0.5
1,785,919 + 13479 mRNA_5111 0.18 -0.2
1,786,059 - 13479 mRNA_5111 0.23 +0.1
1,786,077 + 13479 mRNA_5111 0.23 +1.6

Or see this region's nucleotide sequence