Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5116

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13483 and 13484 are separated by 439 nucleotides13484 and 13485 are separated by 292 nucleotides mRNA_5115: 13483 - Hypothetical Protein, at 1,794,132 to 1,795,760 13483 mRNA_5116: 13484 - K00721 DPM1 dolichol-phosphate mannosyltransferase, at 1,796,200 to 1,797,488 13484 mRNA_5117: 13485 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,797,781 to 1,800,000 13485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,795,353 - 13483 mRNA_5115 0.75 -0.5
1,795,525 + 13483 mRNA_5115 0.86 -0.7
1,795,531 + 13483 mRNA_5115 0.86 -1.3
1,795,963 + +0.7
1,795,972 - -1.3
1,796,091 - +0.3
1,796,095 - -0.4
1,796,101 - -0.7
1,796,102 + -1.3
1,796,108 - -1.3
1,796,115 + -0.2
1,796,118 + -1.1
1,796,119 + -1.4
1,796,185 + -0.4
1,797,421 + +0.2
1,797,701 - -0.4
1,797,724 + +0.4
1,797,728 - -0.3
1,797,758 + -0.4
1,797,881 + -1.0
1,797,924 + -0.0
1,798,159 + 13485 mRNA_5117 0.17 -0.9
1,798,160 - 13485 mRNA_5117 0.17 -1.2
1,798,198 + 13485 mRNA_5117 0.19 -0.8

Or see this region's nucleotide sequence