Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5171

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13538 and 13539 are separated by 455 nucleotides mRNA_5170: 13538 - Hypothetical Protein, at 64,710 to 65,306 13538 mRNA_5171: 13539 - KOG2262 Sexual differentiation process protein ISP4, at 65,762 to 68,577 13539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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65,233 + 13538 mRNA_5170 0.88 +0.9
65,514 + -0.2
65,527 - -0.9
65,611 + -0.4
65,614 + +0.7
65,672 - -0.1
65,673 + +0.5
65,676 + +0.4
65,684 - +0.9
65,691 - -0.3
65,852 + +1.7
65,950 - +0.1
66,256 - 13539 mRNA_5171 0.18 -1.1
66,263 - 13539 mRNA_5171 0.18 +0.1
67,086 - 13539 mRNA_5171 0.47 +0.4
67,136 - 13539 mRNA_5171 0.49 +0.8
67,232 + 13539 mRNA_5171 0.52 +0.2
67,297 + 13539 mRNA_5171 0.55 -1.9
67,351 + 13539 mRNA_5171 0.56 +1.0
67,425 - 13539 mRNA_5171 0.59 +1.9
67,425 + 13539 mRNA_5171 0.59 +0.2
67,524 - 13539 mRNA_5171 0.63 +0.2
67,701 - 13539 mRNA_5171 0.69 -0.2
67,721 + 13539 mRNA_5171 0.70 +0.7
67,759 - 13539 mRNA_5171 0.71 +0.9
67,891 - 13539 mRNA_5171 0.76 -1.2
68,481 + -1.1
68,758 - +0.3
69,026 + +0.1
69,028 - -0.2
69,193 - +0.3
69,193 - +0.8
69,200 + +0.3
69,208 - +0.4
69,327 - +0.6
69,331 - -0.3
69,333 - +0.2
69,337 - -1.0
69,338 + +0.0
69,351 + -0.6
69,355 + -1.1
69,462 - +0.6
69,476 + +0.4
69,499 + -0.6
69,500 - -1.0
69,502 + +0.9
69,503 - -0.1
69,511 + -1.4
69,519 + -0.2

Or see this region's nucleotide sequence