Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5238

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13605 and 13606 are separated by 538 nucleotides13606 and 13607 are separated by 150 nucleotides mRNA_5237: 13605 - K02914 RP-L34, MRPL34, rpmH large subunit ribosomal protein L34, at 234,183 to 234,602 13605 mRNA_5238: 13606 - KOG1199 Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase, at 235,141 to 236,473 13606 mRNA_5239: 13607 - K10859 ALKBH2 alpha-ketoglutarate-dependent dioxygenase alkB homolog 2, at 236,624 to 237,646 13607

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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234,781 + -0.2
234,821 - -0.2
234,822 - -0.8
235,389 - 13606 mRNA_5238 0.19 -0.9
235,564 + 13606 mRNA_5238 0.32 +0.7
235,710 - 13606 mRNA_5238 0.43 +0.6
235,785 - 13606 mRNA_5238 0.48 +0.2
236,125 + 13606 mRNA_5238 0.74 +0.7
236,295 + 13606 mRNA_5238 0.87 -0.6
236,453 + -0.0
236,630 - -0.8
236,723 - +0.6
236,734 + 13607 mRNA_5239 0.11 -0.4
236,743 + 13607 mRNA_5239 0.12 +0.1
236,873 - 13607 mRNA_5239 0.24 -0.1
237,009 - 13607 mRNA_5239 0.38 -1.9
237,342 + 13607 mRNA_5239 0.70 -0.7

Or see this region's nucleotide sequence