Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5280

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13647 and 13648 are separated by 886 nucleotides13648 and 13649 are separated by 771 nucleotides mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344,945 to 347,664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348,551 to 349,893 13648 mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350,665 to 352,490 13649

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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347,729 - +1.5
347,796 + -1.1
347,882 + -0.0
347,904 + +0.2
348,210 - +0.2
348,212 - -0.0
348,312 - +1.2
348,347 + -0.3
348,360 + -0.3
348,384 - -0.2
348,762 + 13648 mRNA_5280 0.16 -0.1
348,798 - 13648 mRNA_5280 0.18 -0.2
349,032 - 13648 mRNA_5280 0.36 +0.2
349,050 + 13648 mRNA_5280 0.37 +1.0
349,356 + 13648 mRNA_5280 0.60 -0.8
349,657 + 13648 mRNA_5280 0.82 +1.5
349,764 + -0.4
349,799 - -1.7
349,802 - +0.0
349,802 + -0.5
349,864 + -0.1
350,002 + -1.9
350,007 + +0.1
350,079 - -0.1
350,110 + -0.6
350,118 + +0.2
350,173 - +0.1
350,177 + -0.0
350,264 - -0.2
350,269 + -0.6
350,269 - -0.5
350,275 - +0.2
350,278 + -0.2
350,283 + -0.1
350,290 - +0.9
350,302 + +0.3
350,430 - -1.1
350,474 + +0.5
350,565 - +1.0
350,647 + +0.7
350,650 - -0.1
350,651 + -0.8

Or see this region's nucleotide sequence