Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5281

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13648 and 13649 are separated by 771 nucleotides13649 and 13650 are separated by 289 nucleotides mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348,551 to 349,893 13648 mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350,665 to 352,490 13649 mRNA_5282: 13650 - Hypothetical Protein, at 352,780 to 353,603 13650

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
349,764 + -0.4
349,799 - -1.7
349,802 - +0.0
349,802 + -0.5
349,864 + -0.1
350,002 + -1.9
350,007 + +0.1
350,079 - -0.1
350,110 + -0.6
350,118 + +0.2
350,173 - +0.1
350,177 + -0.0
350,264 - -0.2
350,269 + -0.6
350,269 - -0.5
350,275 - +0.2
350,278 + -0.2
350,283 + -0.1
350,290 - +0.9
350,302 + +0.3
350,430 - -1.1
350,474 + +0.5
350,565 - +1.0
350,647 + +0.7
350,650 - -0.1
350,651 + -0.8
351,010 - 13649 mRNA_5281 0.19 -0.1
351,384 + 13649 mRNA_5281 0.39 -0.1
351,446 - 13649 mRNA_5281 0.43 -3.3
351,448 + 13649 mRNA_5281 0.43 -0.4
351,453 - 13649 mRNA_5281 0.43 -0.2
351,461 - 13649 mRNA_5281 0.44 +0.7
351,466 + 13649 mRNA_5281 0.44 +0.3
351,467 - 13649 mRNA_5281 0.44 -1.9
351,475 - 13649 mRNA_5281 0.44 +0.8
351,480 + 13649 mRNA_5281 0.45 +0.6
351,543 + 13649 mRNA_5281 0.48 +0.7
351,579 - 13649 mRNA_5281 0.50 +1.8
351,588 - 13649 mRNA_5281 0.51 +0.4
351,591 - 13649 mRNA_5281 0.51 -2.2
351,621 + 13649 mRNA_5281 0.52 -0.4
351,857 + 13649 mRNA_5281 0.65 -0.8
351,937 + 13649 mRNA_5281 0.70 +1.0
352,592 + -0.8

Or see this region's nucleotide sequence