Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5324

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13691 and 13692 are separated by 140 nucleotides13692 and 13693 are separated by 483 nucleotides mRNA_5323: 13691 - K10842 MNAT1 CDK-activating kinase assembly factor MAT1, at 456,066 to 457,717 13691 mRNA_5324: 13692 - KOG2852 Possible oxidoreductase, at 457,858 to 459,287 13692 mRNA_5325: 13693 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF52266, at 459,771 to 461,459 13693

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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457,759 + -0.6
457,780 - -0.4
457,784 - +0.4
457,785 - -0.2
457,798 + -0.5
457,887 + +0.2
457,929 - -0.0
458,084 + 13692 mRNA_5324 0.16 -0.1
458,116 + 13692 mRNA_5324 0.18 -0.6
458,324 + 13692 mRNA_5324 0.33 -0.2
458,535 - 13692 mRNA_5324 0.47 +1.0
458,668 + 13692 mRNA_5324 0.57 +0.3
458,698 - 13692 mRNA_5324 0.59 +1.2
459,022 - 13692 mRNA_5324 0.81 +0.3
459,238 - +0.6
459,242 - +0.0
459,246 + -1.0
459,519 + +0.5
459,546 + -0.2
459,640 + -2.0
459,661 + +0.7
459,669 - -1.4
459,793 - +0.4
459,842 + -1.6
459,988 - 13693 mRNA_5325 0.13 +0.4
460,136 + 13693 mRNA_5325 0.22 +0.7
460,139 - 13693 mRNA_5325 0.22 -1.1
460,139 - 13693 mRNA_5325 0.22 +0.9
460,234 - 13693 mRNA_5325 0.27 +0.7

Or see this region's nucleotide sequence