Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5344

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13711 and 13712 are separated by 37 nucleotides13712 and 13713 are separated by 223 nucleotides mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499,617 to 502,031 13711 mRNA_5344: 13712 - KOG4176 Uncharacterized conserved protein, at 502,069 to 503,147 13712 mRNA_5345: 13713 - Hypothetical Protein, at 503,371 to 504,560 13713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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501,113 - 13711 mRNA_5343 0.62 -1.1
501,574 + 13711 mRNA_5343 0.81 +0.4
501,655 - 13711 mRNA_5343 0.84 -0.1
501,716 + 13711 mRNA_5343 0.87 -0.5
501,754 - 13711 mRNA_5343 0.88 -0.6
501,759 + 13711 mRNA_5343 0.89 -1.6
502,022 + -0.0
502,072 + -0.3
502,203 + 13712 mRNA_5344 0.12 -1.8
502,301 - 13712 mRNA_5344 0.22 +0.5
502,302 + 13712 mRNA_5344 0.22 -0.8
502,313 + 13712 mRNA_5344 0.23 -0.2
502,448 + 13712 mRNA_5344 0.35 -1.8
502,773 - 13712 mRNA_5344 0.65 -0.3
502,888 - 13712 mRNA_5344 0.76 -0.8
503,028 - 13712 mRNA_5344 0.89 +0.0
503,055 + +0.4
503,056 - +0.7
503,162 - -1.7
503,182 - +0.2
503,199 + -0.7

Or see this region's nucleotide sequence