Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5348

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13716 and 13717 are separated by 133 nucleotides mRNA_5348: 13716 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 512,540 to 514,284 13716 mRNA_5349: 13717 - K17427 MRPL46 large subunit ribosomal protein L46, at 514,418 to 515,269 13717

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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511,628 - +0.2
511,643 + +0.4
511,906 - +1.0
511,914 + -1.0
512,063 + -0.4
512,192 - -0.6
512,359 - -0.5
512,521 - -0.4
512,580 - -0.0
512,613 - -0.1
512,636 + +0.0
512,767 - 13716 mRNA_5348 0.13 +0.3
512,785 - 13716 mRNA_5348 0.14 +0.8
512,790 + 13716 mRNA_5348 0.14 +0.9
512,822 + 13716 mRNA_5348 0.16 +1.2
513,049 - 13716 mRNA_5348 0.29 -0.8
513,456 - 13716 mRNA_5348 0.52 +0.2
513,505 + 13716 mRNA_5348 0.55 +0.9
513,525 - 13716 mRNA_5348 0.56 +0.2
513,636 + 13716 mRNA_5348 0.63 +0.2
513,755 - 13716 mRNA_5348 0.70 -0.2
514,183 + +0.5
514,183 + -1.1
514,209 + -1.8
514,298 + -1.1
514,322 - +0.4

Or see this region's nucleotide sequence