Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5349

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13716 and 13717 are separated by 133 nucleotides13717 and 13718 are separated by 444 nucleotides mRNA_5348: 13716 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 512,540 to 514,284 13716 mRNA_5349: 13717 - K17427 MRPL46 large subunit ribosomal protein L46, at 514,418 to 515,269 13717 mRNA_5350: 13718 - K20310 TRAPPC13 trafficking protein particle complex subunit 13, at 515,714 to 517,641 13718

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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513,456 - 13716 mRNA_5348 0.52 +0.2
513,505 + 13716 mRNA_5348 0.55 +0.9
513,525 - 13716 mRNA_5348 0.56 +0.2
513,636 + 13716 mRNA_5348 0.63 +0.2
513,755 - 13716 mRNA_5348 0.70 -0.2
514,183 + +0.5
514,183 + -1.1
514,209 + -1.8
514,298 + -1.1
514,322 - +0.4
515,515 - -0.2
515,515 + -0.4
515,519 - -0.1
515,525 + -2.9
515,528 - -0.1
515,537 - +0.2
515,682 + -2.5
515,823 + -0.4
515,971 + 13718 mRNA_5350 0.13 +1.6
516,089 - 13718 mRNA_5350 0.19 +0.5

Or see this region's nucleotide sequence