Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5379

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13746 and 13747 are separated by 201 nucleotides13747 and 13748 are separated by 124 nucleotides mRNA_5378: 13746 - Hypothetical Protein, at 593,091 to 593,885 13746 mRNA_5379: 13747 - K12829 SF3B2, SAP145, CUS1 splicing factor 3B subunit 2, at 594,087 to 596,220 13747 mRNA_5380: 13748 - K17782 MIA40, CHCHD4 mitochondrial intermembrane space import and assembly protein 40, at 596,345 to 597,306 13748

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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593,099 + +0.5
593,488 - 13746 mRNA_5378 0.50 +0.3
593,647 - 13746 mRNA_5378 0.70 -1.4
593,663 - 13746 mRNA_5378 0.72 +0.0
593,676 + 13746 mRNA_5378 0.74 +0.1
593,975 - +1.0
596,298 + -1.0

Or see this region's nucleotide sequence