Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
1 + +0.7
1 + -0.1
1 + +0.6
1 + -0.1
23 + +1.6
29 + -1.3
29 + -0.1
34 + -0.8
39 + -1.1
39 + +0.2
47 + +0.2
50 + -0.9
50 + -0.1
50 + +0.1
50 + +0.4
50 - -0.8
51 + -0.0
61 + -1.1
62 + -0.2
96 + +0.6
116 + -0.8
158 - -0.2
159 - +0.2
160 - -2.2
169 - +1.0
180 - -1.7
189 + +0.1
198 + +0.3
201 - -1.9
208 - +0.3
210 + -1.0
225 + 13762 mRNA_5394 0.11 -1.4
225 + 13762 mRNA_5394 0.11 +0.5
244 + 13762 mRNA_5394 0.13 +1.6
245 - 13762 mRNA_5394 0.13 -0.6
271 - 13762 mRNA_5394 0.16 -0.7
276 - 13762 mRNA_5394 0.16 -1.4
277 + 13762 mRNA_5394 0.16 +0.3
280 - 13762 mRNA_5394 0.17 +0.3
306 + 13762 mRNA_5394 0.19 +0.5
317 - 13762 mRNA_5394 0.21 -0.1
345 + 13762 mRNA_5394 0.23 -1.5
345 - 13762 mRNA_5394 0.23 +0.2
347 + 13762 mRNA_5394 0.24 +0.0
359 - 13762 mRNA_5394 0.25 -1.8
387 - 13762 mRNA_5394 0.28 -1.0
399 + 13762 mRNA_5394 0.29 +0.2
434 + 13762 mRNA_5394 0.33 +0.1
447 - 13762 mRNA_5394 0.34 -0.8
485 - 13762 mRNA_5394 0.38 -0.1
543 + 13762 mRNA_5394 0.44 +0.4
649 + 13762 mRNA_5394 0.55 +1.3
667 + 13762 mRNA_5394 0.57 -1.8
667 - 13762 mRNA_5394 0.57 +0.9
678 - 13762 mRNA_5394 0.58 +0.4
718 + 13762 mRNA_5394 0.63 -0.3
723 + 13762 mRNA_5394 0.63 -1.4
802 + 13762 mRNA_5394 0.71 +0.5
806 + 13762 mRNA_5394 0.72 -0.8
905 - 13762 mRNA_5394 0.82 -0.4
911 + 13762 mRNA_5394 0.83 -0.2
965 + 13762 mRNA_5394 0.88 +0.0
966 + 13762 mRNA_5394 0.89 +0.3
968 + 13762 mRNA_5394 0.89 -1.2
1,014 - -1.8
1,084 - -0.6
1,103 - +0.1
1,110 + -0.7
1,245 - 13763 mRNA_5395 0.11 +0.3
1,260 - 13763 mRNA_5395 0.13 +0.3
1,376 - 13763 mRNA_5395 0.27 +0.3
1,438 + 13763 mRNA_5395 0.34 +0.5
1,438 + 13763 mRNA_5395 0.34 +0.9
1,438 + 13763 mRNA_5395 0.34 -2.2
1,523 + 13763 mRNA_5395 0.44 -0.9
1,528 - 13763 mRNA_5395 0.45 -0.3
1,533 + 13763 mRNA_5395 0.45 +0.2
1,538 + 13763 mRNA_5395 0.46 +0.1
1,538 - 13763 mRNA_5395 0.46 -0.7
1,556 + 13763 mRNA_5395 0.48 +1.5
1,639 + 13763 mRNA_5395 0.58 -0.4
1,854 - 13763 mRNA_5395 0.83 -0.0
1,855 - 13763 mRNA_5395 0.83 -0.2
1,887 - 13763 mRNA_5395 0.87 -0.6
1,908 - 13763 mRNA_5395 0.89 -0.5
2,000 - +1.4
2,009 + +1.4

Or see this region's nucleotide sequence