Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5455

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13821 and 13822 are separated by 166 nucleotides13822 and 13823 are separated by 63 nucleotides13823 and 13824 are separated by 978 nucleotides mRNA_5453: 13821 - HMMPfam-Glutaredoxin-like domain (DUF836)-PF05768,SUPERFAMILY--SSF52833, at 126,542 to 126,978 13821 mRNA_5454: 13822 - KOG2673 Uncharacterized conserved protein, contains PSP domain, at 127,145 to 127,753 13822 mRNA_5455: 13823 - PRINTS-Proline rich extensin signature-PR01217, at 127,817 to 128,320 13823 mRNA_5456: 13824 - K07034 K07034 uncharacterized protein, at 129,299 to 130,839 13824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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127,034 + -0.8
127,066 + +0.3
127,488 + 13822 mRNA_5454 0.56 -1.3
127,784 + -1.0
128,340 - -0.2
128,478 + +0.1
128,507 - +0.5
128,517 + -0.8
128,533 + +0.9
128,553 + -0.3
128,612 - +3.0
128,622 + -0.5
128,625 + +0.4
128,629 + -1.1
128,635 - -1.0
128,640 - -1.0
128,666 + +0.4
128,681 - +0.9
128,682 - -0.2
128,696 - -0.7
128,709 - -0.7
128,716 - -1.7
128,717 + +1.3
128,732 - +0.2
128,769 + +0.9
128,773 + -0.1
128,789 + -0.4
128,799 - +0.3
128,800 + -2.1
128,801 - +0.4
128,802 + -0.1
128,813 + -1.5
128,813 + -0.1
128,823 + -0.2
128,842 - -0.4
128,852 - -0.6
128,859 + -0.3
128,860 + -0.6
128,863 - +0.6
128,870 - +0.4
128,873 + +0.7
128,876 + -0.4
128,890 - -0.7
128,895 - -0.4
128,904 + -1.1
128,996 - -1.5
129,001 + -1.6
129,025 + -0.6
129,031 + -0.4
129,036 + -0.1
129,051 - -0.7
129,053 - +0.1
129,055 + -0.5
129,058 + -0.7
129,064 - -1.6
129,064 + -1.7
129,067 + +1.6
129,074 + +0.3
129,092 + -0.5
129,101 - +0.3
129,102 - -0.4
129,103 - -0.2
129,106 + +0.5
129,116 + -0.7
129,117 - -0.6
129,120 + -0.4
129,160 - +2.0
129,176 - -0.9
129,189 + +0.2
129,192 + -0.5
129,219 - -0.1
129,220 - -1.3
129,221 + -0.6
129,222 - +0.2
129,223 - +0.3
129,225 + +0.8
129,230 - +0.0
129,231 + -0.1
129,232 - +0.6
129,237 + -1.1
129,239 + -0.1
129,242 - -1.3
129,249 - +0.7

Or see this region's nucleotide sequence