Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5460

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13827 and 13828 are separated by 453 nucleotides13828 and 13829 are separated by 562 nucleotides mRNA_5459: 13827 - K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4, at 137,712 to 142,307 13827 mRNA_5460: 13828 - Hypothetical Protein, at 142,761 to 144,304 13828 mRNA_5461: 13829 - KOG1721 FOG Zn-finger, at 144,867 to 148,106 13829

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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142,477 + -0.7
142,482 + -0.4
142,486 + -0.4
142,658 + +0.1
142,678 + +0.3
142,801 + -0.3
143,078 + 13828 mRNA_5460 0.21 -1.1
143,528 + 13828 mRNA_5460 0.50 +0.5
143,807 - 13828 mRNA_5460 0.68 -1.6
143,902 - 13828 mRNA_5460 0.74 +1.0
144,828 - -1.1
144,832 - -0.1
144,939 + -0.5
145,112 - -1.1
145,132 - -0.5
145,133 + -1.9
145,301 - 13829 mRNA_5461 0.13 +0.2

Or see this region's nucleotide sequence