Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5491

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13858 and 13859 are separated by 353 nucleotides mRNA_5490: 13858 - Hypothetical Protein, at 219,614 to 220,900 13858 mRNA_5491: 13859 - Hypothetical Protein, at 221,254 to 222,129 13859

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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220,274 + 13858 mRNA_5490 0.51 -0.9
220,298 + 13858 mRNA_5490 0.53 -0.9
220,301 - 13858 mRNA_5490 0.53 -0.4
220,408 - 13858 mRNA_5490 0.62 +1.4
220,657 + 13858 mRNA_5490 0.81 +0.2
220,938 + +0.5
220,990 - +0.2
220,990 - +0.8
221,161 + +0.2
221,173 + +0.2
221,178 - -1.7
221,408 + 13859 mRNA_5491 0.18 +1.4
221,741 + 13859 mRNA_5491 0.56 -0.9
222,009 + 13859 mRNA_5491 0.86 -0.4
222,319 + +0.3
222,336 - +0.6
222,449 - +1.1
222,469 - -1.9
222,556 - -0.5
222,792 - -1.2
222,903 + +1.2
222,906 + +1.4
222,918 + +0.7
222,930 + -0.0
222,937 + +0.9
222,969 + +0.4
223,050 - -0.1
223,050 - -0.1
223,060 + +0.2

Or see this region's nucleotide sequence