Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5573

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13940 and 13941 are separated by 367 nucleotides mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405,680 to 409,565 13940 mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409,933 to 411,114 13941

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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409,527 + +0.1
409,575 - -0.5
409,590 + +0.3
409,598 - -1.4
409,614 + +0.1
409,614 + -1.5
409,617 - +1.0
409,624 + +0.0
409,670 - +0.6
409,696 - +0.2
409,717 - +0.4
409,730 + -0.9
409,755 - -1.1
409,834 - -1.0
409,863 - -1.0
409,939 + -0.6
410,023 + -0.6
410,040 + +0.0
410,115 + 13941 mRNA_5573 0.15 -0.1
410,306 + 13941 mRNA_5573 0.32 +0.5
410,323 + 13941 mRNA_5573 0.33 +0.1
410,562 + 13941 mRNA_5573 0.53 -1.3
410,580 + 13941 mRNA_5573 0.55 -0.0
410,769 + 13941 mRNA_5573 0.71 -1.4
410,799 + 13941 mRNA_5573 0.73 +0.6
410,808 + 13941 mRNA_5573 0.74 +0.6
410,828 - 13941 mRNA_5573 0.76 -1.1
410,852 - 13941 mRNA_5573 0.78 +1.5
410,865 + 13941 mRNA_5573 0.79 -0.6
410,988 + 13941 mRNA_5573 0.89 -0.1
411,001 - -0.0
411,007 + -1.2
411,010 + +0.3
411,036 + +0.3
411,059 - -0.2
411,130 - +0.2
411,136 + -0.1
411,149 - -1.1
411,173 - -0.6
411,180 + -0.0
411,185 + +0.9
411,198 + -0.6
411,198 + +0.1
411,220 - -0.8
411,264 - -0.6
411,269 + -1.0
411,271 + -1.2
411,282 + -0.1
411,288 - +0.2
411,293 + -0.7
411,296 - -0.4
411,307 + +0.3
411,310 - -0.9
411,311 - +0.2
411,312 + -0.8
411,315 + -0.8
411,316 - +0.6
411,317 + +0.6
411,317 + -0.2
411,318 + +0.0
411,319 - +0.3
411,319 + -0.1
411,322 - -0.1
411,328 - -1.1
411,337 - +0.8
411,337 + -0.2
411,338 + +0.5
411,345 - -0.0
411,364 - +0.6
411,368 - +1.6
411,374 - +0.0
411,383 - +0.3
411,388 - +2.0
411,395 + +0.5
411,412 + -0.4
411,416 + -0.7
411,424 - -1.7
411,427 - -0.5
411,433 + +0.5
411,438 - -1.6
411,449 - -0.0
411,453 + -0.9
411,455 - -0.3
411,458 - -1.9
411,465 - -0.5
411,466 - -0.6
411,475 + +1.1
411,482 + +0.0
411,489 - -0.2
411,496 - -0.9
411,503 + -0.4
411,504 - -1.0
411,524 - +0.8
411,531 + +1.5
411,541 - +0.8
411,555 - +0.2
411,569 + -0.7
411,570 - -0.2
411,588 - +0.7
411,600 - -0.6
411,619 + -0.3
411,621 - -0.8
411,646 - -0.0
411,651 - -0.3
411,652 - -1.8
411,652 - -1.8
411,657 + -0.4
411,659 + +0.4
411,659 - +0.3
411,661 - -1.5
411,662 - +1.5
411,663 - +0.8
411,663 - -0.9
411,663 + +0.1
411,666 + -0.2
411,672 + +0.1
411,679 + +0.0
411,683 - -1.3
411,684 + -1.0
411,685 + -0.0
411,685 + -0.1
411,685 - +0.1
411,687 - -0.3
411,690 + +0.1
411,692 + +0.2
411,693 + +0.0
411,697 - -0.5
411,702 + +0.1
411,702 - +0.3
411,703 + -0.3
411,707 + -1.1
411,707 + -0.7
411,711 + -0.2
411,715 + +0.1
411,716 + +0.7
411,723 + +0.2
411,727 - -0.1
411,727 + -0.5
411,729 - +0.1
411,742 - -0.1
411,746 - -0.3
411,751 - +0.3
411,754 - +0.7
411,755 + -0.3
411,756 + +0.9
411,761 + -0.1
411,765 - -1.0
411,773 - +0.8
411,774 + -1.2
411,774 + -0.5
411,775 + -1.6
411,775 + +1.1
411,776 + +0.5
411,776 - +0.5
411,781 - +0.6
411,784 + -1.2
411,785 - -0.4
411,788 - +0.1
411,789 - -0.6
411,795 + +0.1
411,795 - -0.4
411,799 + +0.1
411,799 + -0.2
411,801 - -0.1
411,802 - +0.1
411,802 - -2.1
411,815 - -0.2
411,822 - +0.1
411,826 + +0.1
411,831 + +0.5
411,876 + +1.5
411,932 - +0.0
411,948 - -0.5
411,955 + +0.8
411,959 - -0.0
411,959 + -0.3
411,979 + -0.9
411,980 + +0.3
411,985 - -0.2
411,987 + +0.0
411,989 + -0.3
412,064 + -0.7
412,097 + -0.6
412,097 - -0.1

Or see this region's nucleotide sequence