Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5585

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13952 and 13953 are separated by 769 nucleotides mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176 13952 mRNA_5585: 13953 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 438,946 to 439,812 13953

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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438,235 + -0.0
438,536 - +0.4
438,537 + -1.3
438,687 + +0.7
438,734 + -1.2
438,852 + -0.8
439,578 - 13953 mRNA_5585 0.73 +0.0
439,590 + 13953 mRNA_5585 0.74 -1.1
439,714 - 13953 mRNA_5585 0.89 -0.0
439,730 + -0.2
439,738 - +0.3
439,895 + -0.4
439,895 + +0.6
440,058 + +0.7
440,084 - +1.1
440,098 + +0.6
440,129 - -0.7
440,166 - -0.8
440,205 + +1.2
440,208 + -0.5
440,212 - -0.1
440,237 - +0.8
440,238 - -4.0
440,242 - -0.3
440,373 - -0.1
440,374 - +0.1
440,436 - +0.5
440,441 + -0.2
440,451 - -1.6
440,463 - -0.8
440,560 - -0.3
440,566 - -0.9
440,572 - +0.1
440,587 - -0.3
440,591 - -0.1
440,593 - -0.0
440,598 + +1.3
440,750 + -0.3
440,781 - -0.3

Or see this region's nucleotide sequence