Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5607

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13974 and 13975 are separated by 503 nucleotides mRNA_5606: 13974 - HMMPfam-Glycosyl hydrolase family 61-PF03443, at 490,691 to 492,139 13974 mRNA_5607: 13975 - HMMPfam-rRNA processing-PF08524, at 492,643 to 493,643 13975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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491,714 + 13974 mRNA_5606 0.71 -0.5
491,893 + 13974 mRNA_5606 0.83 +0.5
492,008 + +1.5
492,129 - +0.4
492,129 - -0.0
492,261 - -0.6
492,279 + +0.1
492,298 - -0.2
492,303 - +0.5
492,412 - +1.2
492,434 - +0.3
492,459 + -0.1
492,586 - -0.5
492,608 + -0.5
492,727 - -0.5
492,727 - -0.3
492,736 + -0.1
492,736 + +0.5
492,876 + 13975 mRNA_5607 0.23 -1.4
493,331 + 13975 mRNA_5607 0.69 -1.0
493,908 - -0.1
493,924 + -0.1
494,365 + +0.9
494,552 + +0.7

Or see this region's nucleotide sequence