Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5652

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14020 and 14021 are separated by 921 nucleotides mRNA_5652: 14020 - KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development, at 602,133 to 602,528 14020 mRNA_5653: 14021 - Hypothetical Protein, at 603,450 to 604,586 14021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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602,026 - -0.3
602,179 - 14020 mRNA_5652 0.12 +0.5
602,196 - 14020 mRNA_5652 0.16 +0.1
602,302 - 14020 mRNA_5652 0.43 -0.5
602,344 + 14020 mRNA_5652 0.53 -2.3
602,582 - +0.0
602,618 + +0.5
603,372 + +0.4

Or see this region's nucleotide sequence