Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5742

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14110 and 14111 are separated by 224 nucleotides mRNA_5742: 14110 - BLAST spindle pole body protein [Moesziomyces antarcticus T..., at 827,493 to 828,317 14110 mRNA_5743: 14111 - K05672 ABCC12 ATP-binding cassette, subfamily C (CFTR/MRP), member 12, at 828,542 to 833,992 14111

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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826,503 - -0.4
826,740 - +0.2
826,978 - -0.7
826,979 + +0.1
827,212 + +0.5
827,231 - -1.4
827,257 + -1.4
827,258 + +1.2
827,261 + +0.0
827,288 - -0.6
827,330 + -0.4
827,352 + +0.4
827,353 + -0.4
827,389 + -0.7
827,399 + -0.1
827,400 - -0.3
827,401 - -0.7
827,404 - -0.8
827,410 + -0.0
827,414 + -0.1
827,434 + +0.2
827,533 - +0.1
827,545 + +1.1
827,547 - -0.8
827,547 - -1.1
827,547 - +0.5
827,549 - +1.7
827,585 - 14110 mRNA_5742 0.11 +0.4
827,602 - 14110 mRNA_5742 0.13 -0.9
827,647 + 14110 mRNA_5742 0.19 -0.0
827,711 - 14110 mRNA_5742 0.26 -0.2
828,569 - -0.4
828,719 + +1.2
828,721 + -0.5
828,894 + -0.7
829,303 + 14111 mRNA_5743 0.14 -0.9

Or see this region's nucleotide sequence