Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5771

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14138 and 14139 are separated by 250 nucleotides14139 and 14140 are separated by 76 nucleotides mRNA_5770: 14138 - K15171 SUPT4H1, SPT4 transcription elongation factor SPT4, at 904,277 to 904,949 14138 mRNA_5771: 14139 - K00921 PIKFYVE, FAB1 1-phosphatidylinositol-3-phosphate 5-kinase, at 905,200 to 913,412 14139 mRNA_5772: 14140 - BLAST m serotype precursor [Moniliophthora roreri MCA 2..., at 913,489 to 916,106 14140

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
904,209 - -0.6
904,233 + -0.1
904,253 + -0.1
904,257 - +0.8
904,825 + 14138 mRNA_5770 0.81 +0.6
905,086 - -0.6
905,268 + -0.5
905,273 - -0.4
905,294 + -0.3
905,437 + -0.5
905,522 + -0.1
905,524 - -0.4
905,794 - -0.8
905,834 - -0.6
906,005 + -0.3
906,113 + 14139 mRNA_5771 0.11 -0.8
906,115 - 14139 mRNA_5771 0.11 +0.7
906,301 + 14139 mRNA_5771 0.13 -1.4
906,323 + 14139 mRNA_5771 0.14 -1.6
906,415 - 14139 mRNA_5771 0.15 -0.7
906,581 - 14139 mRNA_5771 0.17 -0.6
906,585 - 14139 mRNA_5771 0.17 -0.3
906,601 + 14139 mRNA_5771 0.17 -0.5
906,755 - 14139 mRNA_5771 0.19 +0.6
907,289 - 14139 mRNA_5771 0.25 -0.7
907,441 - 14139 mRNA_5771 0.27 +0.2
909,786 + 14139 mRNA_5771 0.56 -1.1
909,828 - 14139 mRNA_5771 0.56 -0.1
909,829 + 14139 mRNA_5771 0.56 -0.5
910,412 + 14139 mRNA_5771 0.63 +0.5
910,572 + 14139 mRNA_5771 0.65 +1.0
910,972 - 14139 mRNA_5771 0.70 +1.8
911,060 - 14139 mRNA_5771 0.71 +0.4
913,321 - +1.0
913,338 - +0.7
913,346 - +0.3
913,658 + -1.1
914,215 + 14140 mRNA_5772 0.28 +0.4
914,245 + 14140 mRNA_5772 0.29 +0.2
914,411 - 14140 mRNA_5772 0.35 -0.1

Or see this region's nucleotide sequence