Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5775

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14142 and 14143 are separated by 292 nucleotides14143 and 14144 are separated by 360 nucleotides mRNA_5774: 14142 - K11982 RNF115_126 E3 ubiquitin-protein ligase RNF115/126, at 918,001 to 918,584 14142 mRNA_5775: 14143 - Hypothetical Protein, at 918,877 to 919,776 14143 mRNA_5776: 14144 - HMMPfam-Phosphatidylinositol-specific phospholipase C, X domain-PF00388,ProSiteProfiles-Phosphatidylinositol-specific phospholipase X-box domain profile.-PS50007,SUPERFAMILY--SSF51695, at 920,137 to 921,765 14144

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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917,901 - +0.3
918,071 - 14142 mRNA_5774 0.12 -1.1
918,359 + 14142 mRNA_5774 0.61 -0.2
918,521 + 14142 mRNA_5774 0.89 +0.8
918,612 - -0.0
918,770 + -1.6
918,784 - +0.2
918,791 + +0.1
919,057 - 14143 mRNA_5775 0.20 +0.2
919,209 - 14143 mRNA_5775 0.37 +2.0
919,486 - 14143 mRNA_5775 0.68 -0.2
919,515 - 14143 mRNA_5775 0.71 +0.1
919,646 - 14143 mRNA_5775 0.85 +0.8
919,666 - 14143 mRNA_5775 0.88 +1.2
919,726 - +0.4
919,767 - -1.0
919,951 + +0.6
919,973 - -1.4
919,973 - -0.1
919,988 - -0.9
919,997 + +0.2
919,998 - -0.2
920,004 + +0.6
920,013 + -0.9
920,030 + -0.8
920,043 - -1.0
920,069 + +0.0
920,131 + -0.3
920,315 + 14144 mRNA_5776 0.11 -0.0
920,407 - 14144 mRNA_5776 0.17 +0.2
920,615 - 14144 mRNA_5776 0.29 -0.3
920,616 + 14144 mRNA_5776 0.29 +0.4
920,637 + 14144 mRNA_5776 0.31 +0.8

Or see this region's nucleotide sequence