Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5780

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14147 and 14148 are separated by 306 nucleotides14148 and 14149 are separated by 598 nucleotides mRNA_5779: 14147 - K14848 RRB1, GRWD1 ribosome assembly protein RRB1, at 925,113 to 926,759 14147 mRNA_5780: 14148 - KOG2989 Uncharacterized conserved protein, at 927,066 to 928,208 14148 mRNA_5781: 14149 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 928,807 to 930,630 14149

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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926,900 + +0.0
926,925 + -0.9
926,933 + -1.4
926,969 - -1.9
928,382 + -0.1
928,689 + +0.0
928,977 + -0.6
928,989 - +2.4
929,118 + 14149 mRNA_5781 0.17 -0.0
929,122 - 14149 mRNA_5781 0.17 +0.9

Or see this region's nucleotide sequence