Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5802

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14169 and 14170 are separated by 156 nucleotides14170 and 14171 are separated by 326 nucleotides mRNA_5801: 14169 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 972,859 to 974,663 14169 mRNA_5802: 14170 - K07441 ALG14 beta-1,4-N-acetylglucosaminyltransferase, at 974,820 to 975,968 14170 mRNA_5803: 14171 - Hypothetical Protein, at 976,295 to 977,367 14171

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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973,821 - 14169 mRNA_5801 0.53 -0.1
973,951 + 14169 mRNA_5801 0.60 -0.8
974,411 - 14169 mRNA_5801 0.86 -0.9
974,834 - -2.1
975,757 - 14170 mRNA_5802 0.82 +0.1
975,761 - 14170 mRNA_5802 0.82 -0.7
975,771 - 14170 mRNA_5802 0.83 +0.9
975,771 - 14170 mRNA_5802 0.83 -0.7
975,910 - +0.4
975,924 + -0.3
975,927 + -0.1
976,092 + +1.6
976,218 - -0.5
976,221 + -0.6
976,231 + +0.4
976,359 - -1.1
976,474 + 14171 mRNA_5803 0.17 -0.8
976,500 - 14171 mRNA_5803 0.19 +0.7
976,602 - 14171 mRNA_5803 0.29 +0.6
976,698 - 14171 mRNA_5803 0.38 -0.1
976,958 - 14171 mRNA_5803 0.62 -0.6

Or see this region's nucleotide sequence