Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5816

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14184 and 14185 are separated by 173 nucleotides mRNA_5816: 14184 - KOG1437 Fasciclin and related adhesion glycoproteins, at 1,009,642 to 1,012,931 14184 mRNA_5817: 14185 - K09680 coaW type II pantothenate kinase, at 1,013,105 to 1,015,263 14185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,008,723 - -0.5
1,008,836 - -2.3
1,008,843 + +0.4
1,009,262 - -1.0
1,009,286 - +0.0
1,009,425 - +0.2
1,009,428 + -0.3
1,009,443 - +0.1
1,009,577 + +1.8
1,009,589 + -0.2
1,009,602 + -0.2
1,009,603 + +0.3
1,009,627 - -0.1
1,009,753 + -0.0
1,009,760 + +0.9
1,009,891 - -0.5
1,009,905 - -0.1
1,009,914 + +0.2
1,009,922 + -0.2
1,010,023 - 14184 mRNA_5816 0.12 +0.1
1,010,048 + 14184 mRNA_5816 0.12 -0.3
1,010,332 + 14184 mRNA_5816 0.21 +0.3
1,010,485 - 14184 mRNA_5816 0.26 -0.0
1,010,612 + 14184 mRNA_5816 0.29 -0.6
1,010,766 - 14184 mRNA_5816 0.34 +0.6
1,010,910 + 14184 mRNA_5816 0.39 -0.4
1,010,914 - 14184 mRNA_5816 0.39 +0.7
1,010,914 - 14184 mRNA_5816 0.39 -0.2
1,010,927 - 14184 mRNA_5816 0.39 +0.2
1,011,080 - 14184 mRNA_5816 0.44 -0.9
1,011,193 - 14184 mRNA_5816 0.47 -0.1
1,011,344 + 14184 mRNA_5816 0.52 -1.6
1,011,358 - 14184 mRNA_5816 0.52 +0.3
1,011,370 + 14184 mRNA_5816 0.53 -0.1
1,011,626 + 14184 mRNA_5816 0.60 -0.1
1,011,666 - 14184 mRNA_5816 0.62 +0.3
1,011,938 + 14184 mRNA_5816 0.70 +0.7
1,011,965 - 14184 mRNA_5816 0.71 +0.6
1,012,067 - 14184 mRNA_5816 0.74 -1.1
1,012,205 - 14184 mRNA_5816 0.78 -0.1
1,012,630 - -0.2
1,012,787 - +0.2
1,013,118 - +0.2

Or see this region's nucleotide sequence